Insertion junction: CLIP2.074136_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.074136
Chromosome:chromosome 11
Location:1546822
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g468450 CEN1,VFL2,DLE2 20 kD Calcium-Binding Protein Centrin (caltractin); (1 of 1) K16465 - centrin-1 (CETN1) 3'UTR
Cre11.g468500 MPA8 Metallophosphoesterase/metallo-dependent phosphatase; (1 of 1) PTHR22953//PTHR22953:SF46 - ACID PHOSPHATASE RELATED // INACTIVE PURPLE ACID PHOSPHATASE 2-RELATED outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGACACGGACGCTACCGGTCTGTTCCACCAGTACCACCGCACGTGTGGG
Internal bar code:TTTGAGGCTCCACTACACTGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1155
LEAP-Seq percent confirming:43.75
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCCACGATGTTGGGGTAG
Suggested primer 2:CTGACTTGTCCACACGCTCT