Insertion junction: CLIP2.074207_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.074207
Chromosome:chromosome 3
Location:7512303
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205400 (1 of 1) PF01344//PF07707 - Kelch motif (Kelch_1) // BTB And C-terminal Kelch (BACK) 3'UTR
lncRNA_TCONS_00115950 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCAAACCGCACACAGCGCCAGGCCCGATCGCCCACACATCAGCGGCGCC
Internal bar code:TTGTGCTCGGAATTCGTGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:149
LEAP-Seq percent confirming:56.25
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TGCATTGAAGCCCATTCCCT
Suggested primer 2:TGGATCCTTCAGCTGCCTTG