Insertion junction: CLIP2.074392_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.074392
Chromosome:plastome
Location:23187
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802273 2717054,ChreCp011,rpl23 (1 of 1) PTHR11620//PTHR11620:SF20 - 60S RIBOSOMAL PROTEIN L23A // 50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC; 50S ribosomal protein L23 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGACTTTACAGTGTATCCCTTTACCGGTATAGTAATCTTTTGCTTATTT
Internal bar code:CTCGTTCGAAGTTAAATAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:95
LEAP-Seq percent confirming:1.51515
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:65
LEAP-Seq n unique pos:66

Suggested primers for confirmation by PCR

Suggested primer 1:GCAATGCGAGCATTACGGTT
Suggested primer 2:ACGCATATTCCACCACGTCA