Insertion junction: CLIP2.074487_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.074487
Chromosome:chromosome 17
Location:6548297
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre17.g744947 (1 of 1) 2.1.1.230 - 23S rRNA (adenosine(1067)-2'-O)-methyltransferase / Thiostrepton-resistance methylase 5'UTR
lncRNA_TCONS_00240319 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCTCTAATTCAATTAGGGTGATGCGGGGCCTCGCCGCCGCGTGGGGGAG
Internal bar code:GTTGATGTATCGTTGTATTTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:897
LEAP-Seq percent confirming:95.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:AGCATCGTCCATGTCGTTGT
Suggested primer 2:ATTCAACAGGCGCCGAAAAC