Insertion junction: CLIP2.074513_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.074513
Chromosome:chromosome 6
Location:8446412
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g308450 RAF1 (1 of 1) PTHR35299//PTHR35299:SF2 - FAMILY NOT NAMED // RUBISCO ACCUMULATION FACTOR 1, CHLOROPLASTIC-RELATED; RuBisCO accumulation factor 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTGAACACAAAGCATGGATCAACACGTGGCCCGCGGTGCCCATGTGTG
Internal bar code:TGTGAGGGCCACGAAGCGATCG

Confirmation - LEAP-Seq

LEAP-Seq distance:907
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGGCTTTCTTCTTTGTGC
Suggested primer 2:AGCCATCCTCCAGCACTAGA