Insertion junction: CLIP2.074513_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.074513
Chromosome:chromosome 6
Location:8446627
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g308450 RAF1 (1 of 1) PTHR35299//PTHR35299:SF2 - FAMILY NOT NAMED // RUBISCO ACCUMULATION FACTOR 1, CHLOROPLASTIC-RELATED; RuBisCO accumulation factor 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGCCAGGTGTTGGATGCGCGTGTGCCTTCGTGTGCTGCCACAGCTTTG
Internal bar code:TGTGAGGGCCACGAAGCGATCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2798
LEAP-Seq percent confirming:97.4026
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCATCCTCCAGCACTAGA
Suggested primer 2:TGCGGCTTTCTTCTTTGTGC