Insertion junction: CLIP2.074520_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.074520
Chromosome:plastome
Location:31329
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802279 rps8,2716952 30S ribosomal protein S8; (1 of 1) PTHR11758//PTHR11758:SF17 - 40S RIBOSOMAL PROTEIN S15A // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGATTTATTTCTAATTTTTCTAAAGTTACCAATTGAGTTAAAAAAAGCT
Internal bar code:TAAGGTTAGTCTAGGGTAGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:197
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GTCGCACGCCCATTTTTCAA
Suggested primer 2:AAGAGGCACTGTTACGGCAA