Insertion junction: CLIP2.074545_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.074545
Chromosome:chromosome 2
Location:5398447
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre02.g113750 (1 of 6) PTHR22916//PTHR22916:SF9 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCATTCCCCCACCCTGTCACACGGACACACCCTCTGTTGCCAGCACCT
Internal bar code:AATTCGCGTAAATATAAATATA

Confirmation - LEAP-Seq

LEAP-Seq distance:185
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGTATGACACACACCACA
Suggested primer 2:AGTTAACCCGGCCACTGATG