Insertion junction: CLIP2.074556_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.074556
Chromosome:contig 42
Location:21878
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre42.g802227 (1 of 2) IPR001965//IPR011011//IPR012337//IPR013083//IPR019787 - Zinc finger, PHD-type // Zinc finger, FYVE/PHD-type // Ribonuclease H-like domain // Zinc finger, RING/FYVE/PHD-type // Zinc finger, PHD-finger 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTGGGTGCTTTGCACGGGGCGCCGCTGCACGTTGACGGGACGGATTTT
Internal bar code:ATCATCATGGTATGTGGTATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2165
LEAP-Seq percent confirming:1.17647
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:84
LEAP-Seq n unique pos:85

Suggested primers for confirmation by PCR

Suggested primer 1:TCAGTCGTCTAGGTCCAGCA
Suggested primer 2:TGGACAGCGAGGGTGATTTC