Insertion junction: CLIP2.074706_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.074706
Chromosome:chromosome 13
Location:3208790
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g585350 (1 of 1) PTHR10681//PTHR10681:SF68 - THIOREDOXIN PEROXIDASE // SUBFAMILY NOT NAMED 3'UTR
Cre13.g801548 (1 of 1) PF10613 - Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACCGATCTGCACGTTCAGCCTCCAGTCATTACAATTCATGCTTTACCG
Internal bar code:TTCTTTTCAGTTTACATTTATA

Confirmation - LEAP-Seq

LEAP-Seq distance:2565
LEAP-Seq percent confirming:44.7761
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:37
LEAP-Seq n unique pos:67

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGTTTCACCCATGCGCAG
Suggested primer 2:TGTGCGATTGGCTGGTATGT