Insertion junction: CLIP2.074784_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.074784
Chromosome:plastome
Location:8266
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802265 ChreCp003,2716966,chlB (1 of 1) K04039 - light-independent protochlorophyllide reductase subunit B (chlB); light-independent protochlorophyllide reductase subunit B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGTTATTTTAGCTGATGTAAACCATTATCGTGTAAATGAATTACAAGCT
Internal bar code:CTCCCGGGTGGGCTAGGAGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:238
LEAP-Seq percent confirming:8.33333
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:88
LEAP-Seq n unique pos:96

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAAAACCAGGCTGCTTGG
Suggested primer 2:CCCGCTCATATCGGTGTGTT