Insertion junction: CLIP2.074996_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.074996
Chromosome:chromosome 17
Location:1178025
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g704400 (1 of 4) PTHR12298//PTHR12298:SF7 - PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED // SUBFAMILY NOT NAMED 5'UTR
Cre17.g704450 (1 of 4) PTHR12298//PTHR12298:SF7 - PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED // SUBFAMILY NOT NAMED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAATGGGGCAACCAATGAAGCGGAGTTGACAAAGTTATGGCTTGTTATAT
Internal bar code:CTGAGTAAACTAGTACGCGCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2543
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTCAGTTGCTCCTGATGC
Suggested primer 2:CGTACCCATATCCCACGTGG