Insertion junction: CLIP2.075099_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.075099
Chromosome:chromosome 2
Location:1792368
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g086750 (1 of 1) PTHR12709:SF5 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACACACGTGTGGTGCTTCCGACATGTGCGGCTTACGATGGCGGTTGTGG
Internal bar code:GTTTGGGGTCCGGGGTTTGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2878
LEAP-Seq percent confirming:88.0
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TGTACAAAGTTGCGTGCGTG
Suggested primer 2:GAGGGGAAAGACGGAAAGGG