Insertion junction: CLIP2.075244_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.075244
Chromosome:chromosome 12
Location:8913659
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre12.g545800 ROC55,ROC11 Rhythm Of Chloroplast 55; (1 of 24) IPR006553 - Leucine-rich repeat, cysteine-containing subtype intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGGGACACGGCGGGAGGGACACGGCGGTGAACTTTGGCGCCACTGTTCG
Internal bar code:CGCGCTATGCTGTTCTAGAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:197
LEAP-Seq percent confirming:29.4118
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTGCTTCTTCCTGCTGTA
Suggested primer 2:CACGATGGGCTTCTGCAATG