Insertion junction: CLIP2.075344_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.075344
Chromosome:plastome
Location:128720
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802317 atpH,ChreCp053,2717044 ATPase III subunit; (1 of 1) K02110 - F-type H+-transporting ATPase subunit c (ATPF0C, atpE) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAGAATATCAACTTTCCCGAAAAATACCCTTTATAGTGCGTTAGCCAAT
Internal bar code:TTTCCGATTGTACTATTCAAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:122
LEAP-Seq percent confirming:14.2857
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGGTCAAGGTACTGCTGC
Suggested primer 2:TGGTTGTGCTCTTGTAGGCA