Insertion junction: CLIP2.075451_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.075451
Chromosome:chromosome 5
Location:226716
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g243050 TRX3,TRXf2,TRXF2 (1 of 1) PTHR10438:SF258 - THIOREDOXIN F1, CHLOROPLASTIC-RELATED; Thioredoxin f2, chloroplastic outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGATCCCGAGACGTGTGAACGCCGTGCACACGGACAGCGCGCACGCCC
Internal bar code:TAATTTATGATCAACTCCTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:140
LEAP-Seq percent confirming:28.5714
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCACATTGCACCCTCCAT
Suggested primer 2:CGAGTGAAGACGCACCCATA