Insertion junction: CLIP2.075487_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.075487
Chromosome:chromosome 16
Location:1121197
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre16.g649800 PPR3,CYCR6 (1 of 1) PF02984//PF13041 - Cyclin, C-terminal domain (Cyclin_C) // PPR repeat family (PPR_2); PentatricoPeptide Repeat protein 3 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCGGCTAGTCATCCCGTCGTTCATGGACGGTTACCCATTGCCCCCATC
Internal bar code:GGCAAGGGTCCGCCAGATATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:626
LEAP-Seq percent confirming:16.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGCGTTAGCTCGGACTAG
Suggested primer 2:CAACAGCAGTGGAGGTAGCA