Insertion junction: CLIP2.075487_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.075487
Chromosome:plastome
Location:96825
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802305 2716992,ChreCp041,rpoB2 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit II CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATAGAAAAAATGGTTGCATTTTGAGTTTTTTTTAGTTTGTTTTGACGTT
Internal bar code:TCCTTAAGCTAGGCTAGCCTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:315
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:AGATGTGACGCAGCCTTGAA
Suggested primer 2:TCAACAGCAGCTCCATCTGG