Insertion junction: CLIP2.075512_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.075512
Chromosome:chromosome 1
Location:271254
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g800000 (1 of 1) PTHR13271//PTHR13271:SF9 - UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTTCAGTTGTGTTGCGTCCAGCCTTTGCGAAACACACCGAGGGAGCCC
Internal bar code:CTAGCTTCACCTCGTTATTTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:427
LEAP-Seq percent confirming:30.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGCACGTGGAGGAAGTA
Suggested primer 2:GCTCAGGACAGGACTCCAAC