Insertion junction: CLIP2.075518_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.075518
Chromosome:plastome
Location:89812
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802300 rps18,ChreCp036,2717007 (1 of 2) PF01084 - Ribosomal protein S18 (Ribosomal_S18); 30S ribosomal protein S18 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGGGCTTGTTACCGTTTGTTAGTAAAGAACGCAGTTTTTTTAAATAAC
Internal bar code:GGGATTACTTTGCGATAATCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:178
LEAP-Seq percent confirming:31.25
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGGGGAAGGACGTCAGTG
Suggested primer 2:ACAAATTGCAGCCCCTCAGT