Insertion junction: CLIP2.075579_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.075579
Chromosome:chromosome 13
Location:4191460
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g591501 PUS2 (1 of 2) PTHR11142:SF0 - TRNA PSEUDOURIDINE SYNTHASE-LIKE 1; RNA pseudouridine synthase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCAATACTGCGCCACGGCGACGTGCTTTGGGCGTGCGATGAAAGCCGG
Internal bar code:TCTCTATCCCGTGGTTATTTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1453
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:AGGACTTGCATGCTGGGTAC
Suggested primer 2:GCTGTGTCGCCAAACCAATT