Insertion junction: CLIP2.075605_5

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.075605
Chromosome:plastome
Location:41504
Confidence (%):63
Locus systematic id Locus common name Defline Feature
intergenic

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCTAAATGGTCACTAAG
Internal bar code:GTGGACGAACGCACTTTTAGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:124
LEAP-Seq percent confirming:4.7619
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGCATTGGATTCTCACCA
Suggested primer 2:GGCGACTTATAGGGAGTGGC