Insertion junction: CLIP2.075605_6

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.075605
Chromosome:plastome
Location:192904
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802334 orf528 unknown ORF CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTGAGTTTACACATTTTAAAAAAGTGTGACATACTTCTTTTATTTTACT
Internal bar code:TGAAGAATAGTGGTGTGCACTG

Confirmation - LEAP-Seq

LEAP-Seq distance:380
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCACCTTCGTTGGAGCTTCT
Suggested primer 2:CGCACGAGGCAGCATTAAAA