Insertion junction: CLIP2.075712_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.075712
Chromosome:chromosome 7
Location:1036001
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g319650 FXL4,FXL5 FixL-like PAS domain protein; (1 of 3) IPR000014//IPR013767 - PAS domain // PAS fold 5'UTR
Cre07.g319701 (1 of 1) PTHR10071//PTHR10071:SF184 - TRANSCRIPTION FACTOR GATA GATA BINDING FACTOR // GATA TRANSCRIPTION FACTOR 10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTACTTAAGCACAGGCTGAGAATGGGGTATCCGGCATGAGATACCGGTAT
Internal bar code:GTTTTCAGTTCGGGCGGCATAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2245
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGCCTTATAAAAGCCGCC
Suggested primer 2:CGTCGGGCATGATACGAAGA