Insertion junction: CLIP2.075778_4

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.075778
Chromosome:plastome
Location:60235
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802288 rps7,2716973,ChreCp024 30S ribosomal protein S7; (1 of 2) K02992 - small subunit ribosomal protein S7 (RP-S7, MRPS7, rpsG) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTACCGCCACTGCCTGCTTCCTCCTTCCCCTTCGGGCAAGTAAACTTCGG
Internal bar code:GTGCGCTTTTGTAGCAGATTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:136
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:68
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:76

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCCATTGCTAACGCCATG
Suggested primer 2:AGTCTCGCGAAGAGCCTAGA