Insertion junction: CLIP2.075800_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.075800
Chromosome:chromosome 10
Location:5142630
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g455500 GTF4 (1 of 2) PF17035 - Bromodomain extra-terminal - transcription regulation (BET); Global Transcription factor 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCATGGGAGCACCAGCTGCATGGGGACACCTCGCTCCCTTGCCCCGGCG
Internal bar code:GCGCCAAGCCTTTGTGTTTTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2142
LEAP-Seq percent confirming:95.4545
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGTCCGAGAAGTTGTTCA
Suggested primer 2:GCCAACTCACGAAGTCTCCA