Insertion junction: CLIP2.075823_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.075823
Chromosome:chromosome 3
Location:3832756
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g170100 (1 of 1) PTHR31840//PTHR31840:SF1 - FAMILY NOT NAMED // COILED-COIL DOMAIN-CONTAINING PROTEIN 97 3'UTR
Cre03.g170150 (1 of 2) PTHR10857//PTHR10857:SF0 - COPINE // PROTEIN GEM-4 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGCTGTTTGTCTGCCGCAGGGAAGGGACACGCCCATTTTACCTGTGCA
Internal bar code:AGGATCTTCTTCATAGTCGAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1713
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:TTAGGGTGCGATACGGCATC
Suggested primer 2:GCAGATGTCCGAGCACGATA