Insertion junction: CLIP2.075827_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.075827
Chromosome:chromosome 12
Location:1166529
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g490750 (1 of 239) IPR016024 - Armadillo-type fold 3'UTR
Cre12.g490800 (1 of 6) IPR000104//IPR000719//IPR002290//IPR011009//IPR020635 - Antifreeze protein, type I // Protein kinase domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCTATGACGACAACGACAGTTTCATGTCTCTTGAGGCCAGCTAACATGC
Internal bar code:TTCTACAGACAATATACCTTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:5409
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TGACTCAGCGCATGATGGTT
Suggested primer 2:CAAACGTCGCCGCGAATAAT