Insertion junction: CLIP2.075882_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.075882
Chromosome:plastome
Location:136312
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802320 chlN,2716986,ChreCp056 light-independent protochlorophyllide reductase subunit N; (1 of 1) K04038 - light-independent protochlorophyllide reductase subunit N (chlN) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCACAAGAGTTTGGATTGAAAAAATTTGTGGTGCTTTTGGCATTAATCCT
Internal bar code:CGGCATGGATCAAATAGTAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:432
LEAP-Seq percent confirming:38.4615
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCCTGCCAACTGCCTAAT
Suggested primer 2:CCCATTGTTGTAGCACGTGC