Insertion junction: CLIP2.075905_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.075905
Chromosome:chromosome 2
Location:5387362
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g113626 5'UTR
Cre02.g113652 (1 of 2) PTHR24320:SF1 - 3-KETODIHYDROSPHINGOSINE REDUCTASE outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGATGGGCTAGAGCCCAGGGTGAAATGAAAGACGAACTGTCATCGAACT
Internal bar code:ACTTAACGTTAGAGCAATTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:4098
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:AGACTTGGTGCTGTTACCCG
Suggested primer 2:ACCTCAATTGAGTAGCGGCC