Insertion junction: CLIP2.075913_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.075913
Chromosome:plastome
Location:51211
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802285 psbA,ChreCp021,2716969 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGA
Internal bar code:TACGTTATAGTTTATGGTGGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:46
LEAP-Seq percent confirming:3.57143
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:27
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CGGATCGCCATCAAAACCTG
Suggested primer 2:AACTGCCTGCTTCCTCCTTC