Insertion junction: CLIP2.075944_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.075944
Chromosome:chromosome 1
Location:6852619
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g049132 (1 of 1) PTHR23097//PTHR23097:SF105 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCACTGTCGATTGTTCCTCTGCGCCAAAGTAAACTGCATGGCGCGGCGG
Internal bar code:AGAAGTAGGCTTAATTTGACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1632
LEAP-Seq percent confirming:68.4211
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGTGTTTCAGGTGGCTCC
Suggested primer 2:CCGACAGAGTGTCTTGCAGT