Insertion junction: CLIP2.075949_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.075949
Chromosome:plastome
Location:77355
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802295 ChreCp030,psbN,2717031 photosystem II protein N; (1 of 1) K02715 - PsbN protein (psbN) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATATAAATATAGGCAGTCGCGGTACCACTGCCACTGACGTCCTGCCAACT
Internal bar code:AGTGCCCAGTCAAAGTTCCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:205
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:ACTCGCTTGCGAGTTAACCA
Suggested primer 2:AGGTTTACTTGCCCGACCAG