Insertion junction: CLIP2.076050_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.076050
Chromosome:chromosome 10
Location:2211196
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g433650 TMC3 (1 of 4) 2.1.1.178 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase; putative tRNA (cytosine-5)-methyltransferase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTACATCCTCAGGACGTCTGTAGCAGCCGCAAGCCGCTCGCACCCCCAG
Internal bar code:TGTTTGTTAATTCCTGAGAGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2783
LEAP-Seq percent confirming:41.8182
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:32
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGAGCTTCAAGGGACTGG
Suggested primer 2:CTGACTTCTGGGGCTTGGAG