Insertion junction: CLIP2.076108_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.076108
Chromosome:chromosome 4
Location:2150086
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g219950 (1 of 5) IPR000504//IPR012677 - RNA recognition motif domain // Nucleotide-binding alpha-beta plait domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCACCTTCAGAGGGAGTCTGCGGCCCACGGCCCCCGAACACAGTCGTCG
Internal bar code:ATTCTCAGTAAGGTCGTGGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2434
LEAP-Seq percent confirming:98.6842
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:76

Suggested primers for confirmation by PCR

Suggested primer 1:CGCCAGCAATGGTTACGATG
Suggested primer 2:AGGCCGCATCACAAACAAAC