Insertion junction: CLIP2.076133_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.076133
Chromosome:chromosome 1
Location:2413201
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g013801 SXD1,TCY1 (1 of 1) 5.5.1.24 - Tocopherol cyclase; Tocopherol cyclase 1 3'UTR
Cre01.g013850 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACTCCACGCATGCCATCAACGCCCAGCTGTGACCAGCACATCTTGTATT
Internal bar code:GGTCGTCTGGTAATGCATTCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2989
LEAP-Seq percent confirming:43.75
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:AGGATGAGGACGAGGACGAA
Suggested primer 2:GCTGTGGTTAGGCTTGGGAT