Insertion junction: CLIP2.076168_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.076168
Chromosome:plastome
Location:174360
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802329 ChreCp064,psbD,2716961 (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD); photosystem II protein D2 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGCTAAAAATCACATGAGTGCTTGAGCCGTATGCGAAAAAACTCGCAT
Internal bar code:CAAGTGTGGAGTTTTCTTGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:90
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCAAAGAGGCAGAGATGTC
Suggested primer 2:GCTGGTGTTTTAGGTGCTGC