Insertion junction: CLIP2.076194_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.076194
Chromosome:chromosome 13
Location:1899806
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre13.g575776 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR
Cre13.g575800 IGS1 Indole-3-glycerol-phosphate synthase; (1 of 2) 4.1.1.48 - Indole-3-glycerol-phosphate synthase / Indoleglycerol phosphate synthetase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACTTTATCTTGTGAACACTTGGTCACCCGAGATTTATAGACCCATACAC
Internal bar code:GGAGGAGTATGGAACATCGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:329
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TGTGGTGACTGATCGGTGTG
Suggested primer 2:AGCGTTGTCGATAACCGTGT