Insertion junction: CLIP2.076271_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.076271
Chromosome:chromosome 3
Location:4775322
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g177800 (1 of 10) PTHR31867//PTHR31867:SF1 - FAMILY NOT NAMED // EXPANSIN-A1-RELATED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTAGACAGCCAGCTCTTGCTCTTGCTCGTGCTCGTGCTCGTGCTCGTG
Internal bar code:TTTATGATCGTAGTATAAGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3054
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:83
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:83

Suggested primers for confirmation by PCR

Suggested primer 1:GTTATCGTGCCGCTCTAGCT
Suggested primer 2:AGGGCCGCTGTGATTATGAC