Insertion junction: CLIP2.076405_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.076405
Chromosome:chromosome 3
Location:3782773
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g169601 CSB18 {"Probable transposon-derived protein of Chlamydomonas-Specific family B; (1 of 20) IPR010095//IPR013083 - Transposase IS605, OrfB, C-terminal // Zinc finger, RING/FYVE/PHD-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGACGTGGCCGGTTGGGTGGGGTGCACAGTCCGTGCTAACCCGCAGCT
Internal bar code:GTGGCTAGTGGGGTGTCGCCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2250
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TGAGAAGGCGGAGGATGAGA
Suggested primer 2:ACAGTCACCAAGGTTTGCCA