Insertion junction: CLIP2.076407_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.076407
Chromosome:plastome
Location:170289
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802326 psaJ,2716958,ChreCp061 photosystem I subunit IX; (1 of 1) K02697 - photosystem I subunit IX (psaJ) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGTGTGTCAGTCACATTTATTTACCCTCACGGTGAAATAAGCTATTTC
Internal bar code:GCTATAGTAAGTGATAGTGAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1127
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCAGCTGTTTTTGACCCC
Suggested primer 2:TTTGCAACTTTAGCGGGTGC