Insertion junction: CLIP2.076408_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.076408
Chromosome:plastome
Location:102571
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802309 2716996,petG,ChreCp045 (1 of 1) K02640 - cytochrome b6-f complex subunit 5 (petG); cytochrome b6/f complex subunit V 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAAAAGATGTCCCGAAGAGACTACCAACAAAATAAATAAGAAGTTTGTT
Internal bar code:CAGTATCCTTAGCCTACGCGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:94
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCAGCTTTTGGGCAAGAA
Suggested primer 2:AGCTAACAAATCCCCGGCAA