Insertion junction: CLIP2.076410_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.076410
Chromosome:plastome
Location:198729
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAATTGAGTCAATCTGTAAATAGTAATAAAGTTTTTTTACAAAATGTTG
Internal bar code:GGCTTAGAACCGCGTATGTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:722
LEAP-Seq percent confirming:15.1515
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:28
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:TGTGGAGTTCAAGGCATTACGA
Suggested primer 2:AAATGGATGGCCTGCAGGAA