Insertion junction: CLIP2.076525_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.076525
Chromosome:chromosome 9
Location:5282500
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g407200 POD1 Putative all-trans-retinol 13%252C14-reductase; (1 of 3) 5.2.1.13 - Prolycopene isomerase / CRTISO 3'UTR
Cre09.g407250 FAP270 (1 of 3) PTHR24193//PTHR24193:SF87 - ANKYRIN REPEAT PROTEIN // SUBFAMILY NOT NAMED; Flagellar Associated Protein 270 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGCGAAGGCAAATCGGAAAGTCTCGGCACAGCTATAAGCATACACACGT
Internal bar code:ATTGGGCGGCTGGGCAGTTGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:868
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GGTCTTCACGTTCCCGAGTT
Suggested primer 2:GCTGGTGCGTTTGATTGGTT