Insertion junction: CLIP2.076666_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.076666
Chromosome:plastome
Location:187951
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802331 2716963,ChreCp066,psbC (1 of 1) K02705 - photosystem II CP43 chlorophyll apoprotein (psbC); photosystem II 43 kDa protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTAGAACCTCTACGTGGTCCAAACGGTTTAGACTTAAACAAACTTAAAA
Internal bar code:TTTGTATTATATTACCTCAAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:878
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TGGAGTCACAATCCACTGCC
Suggested primer 2:CGATACTTGGGCTCCAGGTG