Insertion junction: CLIP2.076672_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.076672
Chromosome:chromosome 5
Location:974287
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre05.g247000 (1 of 1) PF00439//PF00628//PF02791 - Bromodomain (Bromodomain) // PHD-finger (PHD) // DDT domain (DDT) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGTGTCGTCCACTGGACCGCCTGCTCAAACCTCCGCCCAAGCCAGGGT
Internal bar code:GACTTGGCTGTTCACATCGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:294
LEAP-Seq percent confirming:51.7241
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CACAGTGTTGGATTGGCACG
Suggested primer 2:AAATCGCCTTGCTGGATCCA