Insertion junction: CLIP2.076687_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.076687
Chromosome:plastome
Location:4738
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802264 petD,ChreCp002,2717021 cytochrome b6/f complex subunit 4; (1 of 1) K02637 - cytochrome b6-f complex subunit 4 (petD) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGATTAAAATAGTTTTAAAAATGGATAGATTTAAATAAAAAACAGAAGTA
Internal bar code:TGGTCCGTTCCCAATTGTTCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:308
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:GTACCGTGATAAGGCCTGCA
Suggested primer 2:GTAAACCCCTTCCCCTTCGG