Insertion junction: CLIP2.076885_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.076885
Chromosome:plastome
Location:33796
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802283 rps4,ChreCp020,2716955 30S ribosomal protein S4; (1 of 1) PTHR11831:SF4 - 37S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIAL 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGACGTCCCCTTCGGGATTTTAATGCTCCGTTAGGAGGCAAATAAATTT
Internal bar code:CTTGGTATCCTCTCACAGTATT

Confirmation - LEAP-Seq

LEAP-Seq distance:145
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TACTAGGACGTCCCCTTCCC
Suggested primer 2:CAGCAGCACGCCAACTTATT