Insertion junction: CLIP2.076927_4

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.076927
Chromosome:plastome
Location:19289
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802270 petB,ChreCp008,2717017 cytochrome b6; (1 of 1) K02635 - cytochrome b6 (petB) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTTCTACTGTATTGGTGGTATTACTTTTACATGTTTCCTTGTGCAAGTA
Internal bar code:GCTTAGCAGATCATACATTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:722
LEAP-Seq percent confirming:2.5641
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:38
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:GCTTGACCAACACCAACACC
Suggested primer 2:CCCCTTCGGGCAACTAAAGT