Insertion junction: CLIP2.076937_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.076937
Chromosome:chromosome 16
Location:5142054
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g685400 TIC32-3,SDR26 Short-chain dehydrogenase/reductase; (1 of 1) 1.1.1.105//1.1.1.300 - All-trans-retinol dehydrogenase (NAD(+)) // NADP-retinol dehydrogenase / Retinol dehydrogenase (NADP(+)) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCAGGCGTTTCTCAGTGGTAAGCAAGTGAAGTCCAGAGTGTATTTACT
Internal bar code:TGTTGCCCAATAAATTCGATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1283
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:ACAACAGGGACAATACGCGT
Suggested primer 2:GACACACCAGCGTTGTTGAC